"Look Mark" the car runs even when you turn the key off!, Electrical Gurus please chime in Options

[computers4kids]

OK, here's the deal. I made two changes:
Changes I made
First--My stereo used to be just hooked-up directly to +12V all the time, so I move the lead over in the fuse box (yellow wire) to a switched power fuse so the stereo was only energized when the car is on.

Second--I connected a small switch to constant 12 volts in the fuse panel to power the Alpine amp that I have. This way I can play my ipod through my amp and speakers without having the stereo turned on.

Everything works perfectly, except now when I went to turn the car off after going for a drive....it just kept running (had to pop the clutch and yurn the kill switch on the battery to stop it).
Troubleshooting
Alright, so I pulled the switched hot lead that goes to my stereo and tried to see if I could shut off my running motor--Nope!

So I tried unplugging the hot switched lead to my Alpine as well--still couldn't shut off the engine?????

The fuse box connections are all good--no grounding or touching terminals.
What do you think?
Could one of those relays in the fuse box have something to do with my problem??
I did at one time hear some clicking sound for a bit near the relays when I reconnected everything for the first time.

Any ideas?
Mark