Passenger window adjust, Need some help Options

[914 RZ-1]

I'm trying to get the side windows adjusted. I have gaps I can't seem to close shown by the arrows:



I have later doors on an early car. The windows are the correct ones for the late doors.
Here is an image for reference:


A and B will rotate the window a little and raise it up and down.
Loosening D will allow me to rotate the vertical chrome piece around C. This allows for the window to rotate and move fore and aft.
E allows the window to move fore and aft.
I have tried all combinations I can think of to move the window where it should be. I should note that the doors are not perfectly aligned, but they are very close. But the gaps are too big to be caused by the doors not being aligned. I've looked at other cars and I've placed my components in about the same places and the gaps are way too big.

The window is seated all the way in the track. I can move it a little fore and aft, but I don't want to rotate it because then it won't be bottomed out in the track. I just reused the rubber U-channel and did not glue it or the window in with butyl.

Is there something I'm missing? Could the window glass be wrong?

I painted the car recently and am putting it back together. I think the car was in an accident many many years ago. It was expertly repaired, but it had a late and early door. It never really fit well before I painted the car; there were gaps in the windows, but they weren't that bad and I attributed them to worn seals. I got a later door from another car so I'd have two of the same. This may be partly to blame.