Here's how mine were done by a alarm/remote keyless entry installer, and they work fine.
Click to view attachmentThe installer unfortunately butchered the door a bit more than I would have liked, but I'm sure you could do a much less destructive install along the same lines. The lock motor simply pulls and pushes on the same rod that the door handle does to lock/unlock the door. If you have speakers in the door, this location for the lock motor may not be accessible to you, in which case it's nature's way of telling you to go back to the stock speaker location and repair your door panels. And yes, the doors on my car have been replaced, voluntarily in my case, to get the late window lift mechanism on my early ('70) car.