I always check regardless, both before and after it comes back from the machinist. With the mag cases (i.e. 2.7L) I get them align-bored after they're shaved as well to make sure the mating surfaces are trued. Aluminum cases don't usually have that issue, but on either, it's also a way to go back to std bearings... at least on the OD and depending on your crank journals for the ID.
If it's a four and get's shaved you'll have the cam bore done as well. On sixes the intermediate-shaft bore get's done... TMI right?
You'll have to send it with the through bolts and torqued properly. The factory docs will have the allowed runout for the bores. Those gauges are expensive so a second opinion is definitely a good idea if you're working with new folks.
Good luck!