My car was apart when I purchased it and now that I am putting things back together I could use some help in identifying how to route cables. Thanks.

1 and 3 are for your heater valves
2 not sure
4 throttle cable
5 speedo cable
6 clutch cable

#2 for the small plastic tube for Charcoal canister.

If that pic is from your car, then fix the nr6 now when you have easy access to this area. nr 2 has overspray and can easily be replaced by a new grommet now.

Frank is right, if that is your car the clutch tube has pulled from the lower firewall and should be repaired. There are threads on this site that detail the repair.

Also there's remnants of the inner sleeve of the accel cable in that tube. Test fit your new accell cable and odds are that you'll have to cut a slot in the mount sleeve.