Mike...you putz with stuff enough you can figure out what's going on.......
1. With the injector stuck in the bend prior to the port, it presents an airflow restriction (just like the stem and guide), but gives good turblence for fuel/air mixing. Of course the turblence also has an effect on cylinder filling.
2. An injector above the body doesn't present this restriction, so you would get better air flow, less turblent and better cylinder fill.
3. The only problem with #2, is spraying a fine enough mist to get the fuel dispersed in the volume of air. The turblence of the air passing the valve head should provide for the "mix".
Yeh, I know it's kinda late at night
and I got nuthin else to say.