Actually, the rods can be in balance but different lengths. Typically resizing the large end for a new bearing at the machine shop involves cutting some material off the cap and then honing to round again. You can end up with rods of different lengths after this is done a few times.
I would be pretty sore with my machine shop if they gave me back rods of differing lengths after they were re-bushed and balanced.
Its not terribly hard to remove the rods with the case in tact....
Pull all the pistons and cylinders.
Use a socket wrench from the other side while you hole the rod.
Be careful not to drop anything...
BTDT at 2AM on one rod...got it done and won the next day...so I know it can be done.
Rich