Yes, that is exactly what I did using a 1/16" drill bit. I ended up pretty close to the center of the tapped holes. I used the features on the driver side door as reference such as the front window track recess in the door top portion. Using masking tape on the passenger door, I created my lines and target to replicate the driver side.
Once the 1/16 hole was done and determined to be within the tapped hole, I gradually opened it up using a Dremel with a small burr since my 1/16" pilot hole wasn't perfectly centered.
Here is the result after plugging the useless holes that had been done by one or the POs.
Click to view attachmentGood luck!