If your internal shift forks are adjusted correctly (and yours are, I did it), then your shifting issues are external. I am having a hard time with the clarity of your problems so I will address the top 3:
1. I cant find "insert gear numbers here"
If you cant find gears that are on the same plane; 1-3-5, R-2-4, 1-R, 4-5, then your shifter bar adjustment is off.
If you cant find 1-3-5 or R-2-4 then you need to loosen the pinch bolt and slide the shift lever TOWARDS the gears that you CAN find; if you have R-2-4 and need 1-3-5, move the lever more towards the front of the car when the bolt is loose. This will shorten the shift rod and give you more pull in the 1-3-5- plane.
***With your problem of not finding 4-5 you must adjust the L-R plane.
Q1. How do you know you have R-1, and 2-3? 2-3 can easily be in the R-1 position and 4-5 would then be in the 2-3 position. This would make you shifting seem to stop after 3rd gear. If this is the case you need to:
- Loosen the pinch bolt
- Move your stick shift towards the drivers side while keeping the shift rod in the tunnel from moving.
- Re-tighten the pinch bolt with the stick shift held in the new position
- Discover the missing gears.
Now you are ready to find the real second gear and adjust your shifter as stated in the post above.
2. After a rebuild, it is hard to get it into gear = need more strength.
This is perfectly normal for a while after a rebuild. Synchro bands vary in their stiffness and thus how easy they collapse. New ones are very stiff, older ones are easier to use. If your shift linkage is adjusted correctly, and it is not grinding when shifting, then you are fine and need to man up
The newer/new synchro bands will cause any weak or worn out parts of your shift linkage to fail so fix it now or on the side of the road.
3. Grinds when going into gear or pops out of gear once in.
this is an actual problem. Grinding should not happen on a rebuild. Poping out of gear, so long as it is not that the linkage is not adjusted correctly, is not acceptable on a rebuild either.
1st will grind sometimes after a rebuild depending on if you are down shifting with the tranz still spooled up. It should not be more than minor, though and you need to check your clutch cable to make sure your clutch is totally disengaging.
Charlie,
you need to adjust the linkage every time you pull the engine or tranny. You will not be able to align the drive train exactly the same in the car and any movement of the drive train with relation to the car (where the shift linkage is affixed) will throw off the pattern. That is why bad engine or tranny mounts can cause shifting issues.